PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19048_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 160aa    MW: 18429.6 Da    PI: 7.3471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19048_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10131158330
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                  ++h+e+ErrRR+riN+ +++Lr++lP+ 
  RrC19048_p1 131 KSHSEAERRRRERINTHLANLRSILPNT 158
                  79************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.896128160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7131158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-8131158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.34E-7132159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLQHHPQ ILPWSSLPSF DPSYFPSNPT RHPDPVPYFN  60
RRASSSSFFD YTDGFVSPPS TDRHHPNHLR VLSEALGPIM RRGSSFGFED EIMGKLSAQE  120
VMDAKALAAS KSHSEAERRR RERINTHLAN LRSILPNTTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697361.11e-100PREDICTED: transcription factor AIG1-like
SwissprotQ9LS082e-87BH032_ARATH; Transcription factor AIG1
TrEMBLM4ECK01e-100M4ECK0_BRARP; Uncharacterized protein
STRINGBra026510.1-P1e-99(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.17e-81basic helix-loop-helix 32